Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs72774504 | chr2:271703 | C/A | 5.44E-12 | 486 | 16.02 | 14.97 | 20.63 | KM Plot |
| THCA | rs72783189 | chr16:69852922 | T/C | 0.000171 | 486 | 16.27 | 10.62 | 18.18 | KM Plot |
| THCA | rs72783195 | chr16:69855498 | G/C | 0.000106 | 484 | 16.23 | 10.63 | 18.18 | KM Plot |
| THCA | rs72783198 | chr16:69856478 | G/A | 0.000116 | 485 | 16.07 | 11.18 | 18.18 | KM Plot |
| THCA | rs72808422 | chr2:47582692 | A/T | 8.89E-6 | 485 | 16.22 | 13.9 | 14.63 | KM Plot |
| THCA | rs72844216 | chr6:28433382 | A/C | 2.5E-11 | 479 | 15.7 | 17.1 | 20.18 | KM Plot |
| THCA | rs72854550 | chr6:28378131 | G/A | 9.41E-8 | 490 | 15.68 | 16.93 | 16.47 | KM Plot |
| THCA | rs72854558 | chr6:28398984 | T/G | 1.02E-7 | 487 | 15.67 | 16.97 | 16.47 | KM Plot |
| THCA | rs72854739 | chr2:29020360 | C/G | 0.000158 | 488 | 15.52 | 17.93 | 14.3 | KM Plot |
| THCA | rs72854744 | chr2:29026968 | T/C | 0.000118 | 489 | 15.32 | 17.93 | 14.98 | KM Plot |
| THCA | rs72854758 | chr2:29038532 | C/T | 9.62E-5 | 489 | 15.9 | 17.08 | 14.98 | KM Plot |
| THCA | rs7285528 | chr22:43686154 | C/A | 3.16E-10 | 487 | 15 | 17.77 | 4.6 | KM Plot |
| THCA | rs728615 | chr10:81848089 | G/A | 0.000145 | 488 | 15.97 | 16.07 | 9.77 | KM Plot |
| THCA | rs728616 | chr10:81847914 | G/T | 0.000212 | 488 | 15.9 | 17.23 | 9.77 | KM Plot |
| THCA | rs72903208 | chr6:87167592 | A/G | 4.66E-14 | 480 | 14.93 | 17.03 | 21.03 | KM Plot |